| 2027 |
| "You can’t hide beneath the mask: Exploring representational unmasking through self-supervised learning for multi-view malware recognition," A. S. Bozkir, E. Eroglu Demirkan, M. Aydos, Expert Systems with Applications, 2027. |
| "Predicting the conditional distribution of risk aversion: The role of climate risks in a cross-quantilogram framework," A. Olaniran, D. Gabauer, R. Gupta, O. Polat, The North American Journal of Economics and Finance, 87, 102704, 2027. |
| 2026 |
| "Off-grid rural electrification using two-level radial distribution networks," K. Gokbayrak, D. Dinler, Computers & Industrial Engineering, 2026. |
| "Adaptive optimization approach for production and distribution planning of perishable food products under demand uncertainty," F. Avishan, İ. Yanıkoğlu, M. Soysal, Annals of Operations Research, 2026. |
| "Modeling a humanitarian-aid covering tour problem with location selection and vehicle assignment decisions," K. Kılıç, M. Meterelliyoz, İ. Güvenç Pelit, M. Soysal, International Transactions in Operational Research, 2026. |
| "GenAI Dependency Risk: Insights Through the Lens of Mindset, GenAI Literacy, and Academic Stress," Ş. Gökçearslan, M. C. Aktan, B. Yılmaz, E. Gökçearslan, New Directions for Child and Adolescent Development, 2026. |
| "Learned societies in the academic landscape: challenges in identifying and categorizing organizations," E. Kulczycki, J. Pölönen, M. Laakso, Z. Taşkın, Scientometrics, 2026. |
| "Sustaining the “frozen footprints” of scholarly communication through open citations: An Annual Review of Information Science and Technology (ARIST) paper," Z. Taşkın, Journal of the Association for Information Science and Technology, 2026. |
| "Beyond local climate zones: Continuous morphology archetypes for heat mitigation across 66 cities," S. Emekci, H. Emekci, Sustainable Cities and Society, 2026. |
| "Composite super-twisting control of an underactuated crane with partial-state measurements under parameter uncertainties and frictions: design and experiments," M. A. Shehu, A. B. Alhassan, Z. Mohamed, M. Ö. Efe, K. Talapiden, T. D. Do, ISA Transactions, 2026. |
| "Neural Network Augmented Koopman Explicit Model Following Control for Robotic Manipulators," O. K. Hancioglu, M. Ö. Efe, IEEE Access, 2026. |
| "Evolutionary neural architecture search: a survey," F. N. Özçelik, M. Ö. Efe, Turkish Journal of Electrical Engineering and Computer Sciences, 2026. |
| "An overview of sign language processing from natural language processing perspective," B. Mutlu, Y. C. Bilge, Computer Science Review, 60, 100907, 2026. |
| "How well do vision models understand tasks with multiple labels?," Y. C. Bilge, Expert Systems with Applications, 314, 131479, 2026. |
| "Forecasting Natural Gas Futures Price Volatility of the United States: National Versus State-Level Climate Concern Indexes," A. A. Salisu, A. E. Ogbonna, R. Gupta, O. Polat, Journal of Futures Markets, 46 (7), pp. 1275–1297, 2026. |
| "Industrial practices for evaluating quality of open source software: a practitioner survey," N. Yılmaz, A. Kolukısa, M. Özkaya, Software Quality Journal, 34, 23, 2026. |
| "Molecular contrastive learning with graph attention network (MoCL-GAT) for enhanced molecular representation," A. Dalkıran, A. S. Rifaioglu, R. Cetin-Atalay, A. C. Acar, T. Doğan, M. V. Atalay, BMC Bioinformatics, 2026. |
| "The role of extended reality technologies in hygiene education and training: a systematic review of applications, benefits, and challenges," E. A. Meşe, F. Basmaci, A. C. Bulut, D. Topallı, F. Şenel, N. E. Cagiltay, BMC Infectious Diseases, 26 (1), 272, 2026. |
| "Mixed-integer linear programming approximations for the stochastic knapsack," R. Rossi, S. D. Prestwich, S. A. Tarim, Computers & Operations Research, 194, 107571, 2026. |
| "Investigating the effect of phase sensitivity and cost function selection in predictive simulation of human stumble recovery," O. F. Seven, M. Bicer, M. A. Adli, Journal of Biomechanics, 206, 113496, 2026. |
| "Implied skewness of the Treasury yield: A new predictor for stock market bubbles," O. Polat, R. Gupta, R. Demirer, E. Bouri, Global Finance Journal, 72, 101313, 2026. |
| "SELFormerMM: multimodal molecular representation learning via SELFIES, structure, text, and knowledge graph integration," E. Ulusoy, Ş. Bostancı, B. E. Deniz, T. Doğan, Bioinformatics, 42 (Supplement_2), btag451, 2026. |
| "A Reliable and Explainable Ensemble Framework for Lithium-Ion Battery Charge Estimation," B. Asal, S. Oyucu, A. Aksöz, F. Kurker, I. Bozkurt, E. Biçer, Energy Storage, 8 (5), e70450, 2026. |
| "Improved Energy Resolution in Amorphous Selenium X-Ray Detectors via Unipolar Charge Sensing," A. Camlica, Y. Mart, P. M. Levine, D. L. Lee, K. S. Karim, IEEE Electron Device Letters, 47 (8), pp. 1635–1638, 2026. |
| "A covering tour-based inventory routing framework for humanitarian logistics," H. C. Uzgören Kazanç, M. Soysal, Z. B. Kanık, L. C. Coelho, Annals of Operations Research, 2026. |
| "Wearable sensor technology and machine learning for anterior cruciate ligament injury diagnosis: an exploratory feasibility study," N. E. H. Allott, M. Bicer, J. Korgaonkar, R. Thomas, M. S. Banger, A. H. McGregor, BMJ Open, 16 (6), e107409, 2026. |
| "DTA-GNN: a toolkit for constructing target-specific drug–target affinity datasets and training graph neural networks," G. Özsari, A. S. Rifaioğlu, A. C. Acar, T. Doğan, M. V. Atalay, SoftwareX, 34, 102671, 2026. |
| "International political risk management: a review and decision-making framework," M. R. Hilbck Rios, T. C. Lawton, N. McCarthy, S. A. Tarim, Multinational Business Review, 34 (3), pp. 427–459, 2026. |
| "Noise Reduction in Charge-Sensitive Amplifiers for X-Ray Imagers With Large Line Capacitance," H. H. Abbasali, A. Camlica, P. M. Levine, IEEE Transactions on Circuits and Systems I: Regular Papers, 73 (4), pp. 2464–2473, 2026. |
| "Predicting human gait kinematics and kinetics from a single inertial measurement unit using deep learning and synthetic datasets: A blinded assessment study," M. Bicer, A. T. M. Phillips, O. F. Seven, M. Banger, A. H. McGregor, L. Modenese, Journal of Biomechanics, 198, 113149, 2026. |
| "Federated Learning for Intrusion Detection Under Class Imbalance: A Multi-Domain Ablation Study with Per-Client SMOTE," A. Demirbaş Paray, M. Aydos, Applied Sciences, 16 (2), 801, 2026. |
| "Fraud Detection Framework for Blockchain Finance: Tackling Arbitrage, Liquidity Exploits, and Money Laundering," A. Ozer, M. Aydos, International Journal of Intelligent Systems, 2026 (1), 3803992, 2026. |
| "Machine learning forecasting of U.S. stock market volatility: The role of stock and oil bubbles," O. Polat, R. Gupta, D. Somani, S. Karmakar, Research in International Business and Finance, 2026. |
| "Predicting oil price bubbles: monetary policy versus central bank information shocks," O. Polat, R. Gupta, M. Brahim, E. Bouri, The North American Journal of Economics and Finance, 2026. |
| "Methodological challenges in content-based citation analysis: Expertise, reliability, and the primacy of citance identification," Z. Taşkın, Journal of the Association for Information Science and Technology, 2026. |
| "Beyond the Oligopoly: Scholarly Journal Publishing Landscapes in Latin America and Europe," E. Kulczycki, J. O. Alonso-Gamboa, F. Beigel, L. Digiampietri, M. Laakso, J. Pölönen, Z. Taşkın, G. Vélez Cuartas, Journal of Data and Information Science, 2026. |
| "Physical and transition climate risks and financial risk predictability in the US banking sector," P. Caraiani, O. Polat, R. Gupta, E. Bouri, International Review of Economics & Finance, 107, 105099, 2026. |
| "University journals in the global academic publishing landscape: Mapping over 19,000 diverse titles based on Ulrichsweb data," M. Nazarovets, M. Laakso, Z. Taskin, Scientometrics, 2026. |
| "Weight stability intervals for multi-criteria decision analysis using the weighted sum model," R. O'Shea, P. Deeney, E. Triantaphyllou, L. Diaz-Balteiro, S. A. Tarim, Expert Systems with Applications, 296, 128460, 2026. |
| "Experimental insights into muscle and joint roles in stumble recovery: A scoping review," O. F. Seven, M. Bicer, M. A. Adli, Gait and Posture, 123, 109963, 2026. |
| "OmniPath: integrated knowledgebase for multi-omics analysis," D. Türei, J. Schaul, N. Palacio-Escat, B. Bohár, Y. Bai, F. Ceccarelli, E. Çevrim, M. Daley, M. Darcan, D. Dimitrov, T. Doğan, D. Domingo-Fernández, A. Dugourd, A. Gábor, L. Gul, B. A. Hall, C. T. Hoyt, O. Ivanova, M. Klein, T. Lawrence, D. Mañanes, D. Módos, S. Müller-Dott, M. Ölbei, C. Schmidt, B. Şen, F. J. Theis, A. Ünlü, E. Ulusoy, A. Valdeolivas, T. Korcsmáros, J. Saez-Rodriguez, Nucleic Acids Research, gkaf1126, 2026. |
| "Climate risks and predictability of the conditional distributions of rare earth stock returns and volatility," O. Polat, R. Gupta, E. Bouri, M. Brahim, Journal of Economics and Finance, 50 (1), 15, 2026. |
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| 2025 |
| "Dynamic open time-dependent traveling salesman problem with speed optimization," M. Çimen, M. Soysal, S. Belbağ, H. C. Kazanç, International Transactions in Operational Research, 2025. |
| "Modeling a Location and Routing Problem for Mobile Lockers in Last-Mile Delivery With Horizontal Collaboration," S. G. Korkmaz, M. Soysal, Ç. Sel, H. Dündar, Networks, 2025. |
| "A probabilistic bi-objective model for a humanitarian location-routing problem under uncertain demand and road closure," S. Temiz, H. C. Kazanç, M. Soysal, M. Çimen, International Transactions in Operational Research, 2025. |
| "Modeling a closed-loop inventory routing problem for returnable transport items under horizontal logistics collaborations and dynamic demand structure," E. Yavrucu, M. Soysal, Ç. Sel, M. Çimen, A. Hamzadayı, Transportation Letters, 2025. |
| "A systematic review of the blockchain application in healthcare research domain: toward a unified conceptual model," S. Cihan, N. Yılmaz, A. Ozsoy, O. D. Beyan, Medical and Biological Engineering and Computing, 2025. |
| "Research funding in Turkiye: linking TUBITAK policy change to scientific productivity," F. Aydın, Z. Taşkın, Scientometrics, 2025. |
| "Mapping the publisher types and collaborations behind Web of Science indexed journals," Z. Taşkın, J. Pölönen, E. Kulczycki, M. Laakso, Quantitative Science Studies, 2025. |
| "Closing the door behind: metric-based research evaluation systems and gatekeeping towards young researchers," H. S. Şener, İ. S. Kaya, M. S. Köksal, Z. Taşkın, Scientometrics, 2025. |
| "Opening Ottoman Miniature Collections Through Computational Access: Methodological Lessons for Digital Humanities," E. C. Ç. Beton, Z. Taşkın, Journal of Open Humanities Data, 2025. |
| "Enhancing Malware Detection via RGB Assembly Visualization and Hybrid Deep Learning Models," E. Eroğlu Demirkan, M. Aydos, Applied Sciences, 2025. |
| "Comparative Study of Disturbance Observer-Based Control Methods on an Industrial Gimbal System," M. R. Kaplan, B. Kurkcu, M. Ö. Efe, Z. Y. Bayraktaroglu, IEEE Access, 2025. |
| "Usability assessments in clinical decision support systems," H. C. Cubukcu, H. Canbaz, Northern Clinics of Istanbul, 12 (3), pp. 372–377, 2025. |
| "AI-driven discovery of antiretroviral drug bictegravir and etravirine as inhibitors against monkeypox and related poxviruses," Y. Wang, A. Ünlü, X. Wang, E. Çevrim, D. M. Offermans, M. P. Flesseman, L. M. Zaeck, L. Wu, M. J. C. Bijvelds, N. A. Sam-Agudu, R. D. de Vries, K. Raymond, P. Li, A. Olğaç, W. Wang, T. Doğan, Q. Pan, Communications Biology, 8 (1), 1734, 2025. |
| "MoDeST: A dataset for Multi Domain Scientific Title Generation," N. Bölücü, Y. C. Bilge, D. Çetintaş, Z. Yücel, Knowledge-Based Systems, 321, 113557, 2025. |
| "Mpox: disease manifestations and therapeutic development," Y. Wang, X. Wang, T. Doğan, N. A. Sam-Agudu, J. A. Al-Tawfiq, Q. Pan, Journal of Virology, 99 (9), 2025. |
| "A heuristic method for perishable inventory management under non-stationary demand," S. Gulecyuz, B. O'Sullivan, S. A. Tarim, Omega, 133, 103267, 2025. |
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"Target-specific de novo design of drug candidate molecules with graph-transformer-based generative adversarial networks," A. Ünlü, E. Çevrim, M. G. Yiğit, A. Sarıgün, H. Çelikbilek, O. Bayram, D. C. Kahraman, A. Olğaç, A. S. Rifaioglu, E. Banoğlu, T. Doğan, Nature Machine Intelligence, 7 (9), pp. 1524–1540, 2025.
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| "Simple heuristics for the joint inventory and pricing models with fixed replenishment costs," M. E. Gurkan, H. Tunc, S. A. Tarim, Journal of the Operational Research Society, 76 (3), pp. 567–580, 2025. |
| "Protein language models for predicting drug–target interactions: Novel approaches, emerging methods, and future directions," A. Ünlü, E. Ulusoy, M. G. Yiğit, M. Darcan, T. Doğan, Current Opinion in Structural Biology, 91, 103017, 2025. |
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| 2024 |
| "Sustainable vehicle allocation decisions under a vertical logistics collaboration setting," D. Benli, M. Çimen, M. Soysal, Journal of Cleaner Production, 2024. |
| "A review on sustainability, Industry 4.0 and collaboration implications in vehicle allocation operations," M. Çimen, D. Benli, M. İbiş Bozyel, M. Soysal, International Journal of Logistics Management, 2024. |
| "A many-to-many pick-up and delivery problem under stochastic battery depletion of electric vehicles," M. İbiş Bozyel, M. Soysal, M. Çimen, Transportation Letters, 2024. |
| "Advancing Electric Vehicle Infrastructure: A Review and Exploration of Battery-Assisted DC Fast Charging Stations," A. Aksoz, B. Asal, E. Biçer, S. Oyucu, M. Gençtürk, S. Golestan, Energies, 2024. |
| "Ensemble-Based Knowledge Distillation for Video Anomaly Detection," B. Asal, A. B. Can, Applied Sciences, 2024. |
| "Quality evaluation meta-model for open-source software: multi-method validation study," N. Yılmaz, A. Kolukısa Tarhan, Software Quality Journal, 2024. |
| "How metric-based performance evaluation systems fuel the growth of questionable publications?," O. Öztürk, Z. Taşkın, Scientometrics, 2024. |
| "Questionable conferences and presenters from top-ranked universities," E. Kulczycki, M. Hołowiecki, Z. Taşkın, Journal of Information Science, 2024. |
| "DICEguard: enhancing DICE security for IoT devices with periodic memory forensics," Y. Yamak, S. Tosun, M. Aydos, Journal of Supercomputing, 2024. |
| "Enhancing Agile Story Point Estimation: Integrating Deep Learning, Machine Learning, and Natural Language Processing with SBERT and Gradient Boosted Trees," B. Yalçıner, K. Dinçer, A. G. Karaçor, M. Ö. Efe, Applied Sciences, 2024. |
| "Modelling and dynamic characterisation of a double-pendulum overhead crane carrying a distributed-mass payload," M. M. Bello, Z. Mohamed, M. Ö. Efe, H. Ishak, Simulation Modelling Practice and Theory, 2024. |
| "A Modified Levenberg Marquardt Algorithm for Simultaneous Learning of Multiple Datasets," M. Ö. Efe, B. Kürkçü, C. Kasnakoğlu, Z. Mohamed, Z. Liu, IEEE Transactions on Circuits and Systems II: Express Briefs, 2024. |
| "Switched Neural Networks for Simultaneous Learning of Multiple Functions," M. Ö. Efe, B. Kürkçü, C. Kasnakoğlu, Z. Mohamed, Z. Liu, IEEE Transactions on Emerging Topics in Computational Intelligence, 2024. |
| "Masked Multiple State Space Model Identification Using FRD and Evolutionary Optimization," M. Ö. Efe, B. Kürkçü, C. Kasnakoğlu, Z. Mohamed, Z. Liu, IEEE Transactions on Industrial Informatics, 2024. |
| "An IRP Model to Improve the Sustainability of Cold Food Supply Chains under Stochastic Demand," S. Jahdi, S. Gulecyuz, S. O’Reilly, B. O’Sullivan, S. A. Tarim, Journal of Cleaner Production, 462, 142615, 2024. |
| "A Simple Heuristic for Computing Non-Stationary Inventory Policies Based on Function Approximation," O. A. Kilic, S. A. Tarim, European Journal of Operational Research, 316, pp.899–905, 2024. |
| "On the Stochastic Inventory Problem Under Order Capacity Constraints," R. Rossi, Z. Chen, S. A. Tarim, European Journal of Operational Research, 312, pp.541-555, 2024. |
| "The trade-off between bias and imprecision: Debunking the myth of bias as the primary culprit in patient result misclassification," H. C. Çubukçu, American Journal of Clinical Pathology, 161 (5), pp. 513–516, 2024. |
| "Describing the Flick Movement Kinematic Biomechanically and Investigating the Effect of Thrower’s Ten Exercises in Underwater Hockey Players," D. Deniz, L. Eraslan, C. Bas, V. B. Tunay, Journal of Sport Rehabilitation, 33 (7), pp. 522–530, 2024. |
| "Machine learning-based clinical decision support using laboratory data," H. C. Çubukçu, D. İ. Topcu, S. Yenice, Clinical Chemistry and Laboratory Medicine, 62 (5), pp. 793–823, 2024. |
| "APS calculator: A data-driven tool for setting outcome-based analytical performance specifications for measurement uncertainty using specific clinical requirements and population data," H. C. Çubukçu, F. Vanstapel, M. Thelen, M. Van Schrojenstein Lantman, F. A. Bernabeu-Andreu, P. Meško Brguljan, N. Milinkovic, S. Linko, M. Panteghini, G. Boursier, Clinical Chemistry and Laboratory Medicine, 62 (4), pp. 597–607, 2024. |
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| 2023 |
| "Managing returnable transport items in a vendor managed inventory system," M. Soysal, Ç. Koç, M. Çimen, M. İbiş, Socio-Economic Planning Sciences, 2023. |
| "Optimizing food logistics through a stochastic inventory routing problem under energy, waste and workforce concerns," İ. Köseli, M. Soysal, M. Çimen, Ç. Sel, Journal of Cleaner Production, 2023. |
| "Dynamic routing optimization with electric vehicles under stochastic battery depletion," V. Ünal, M. Soysal, M. Çimen, Ç. Koç, Transportation Letters, 2023. |
| "Towards Zero-Shot Sign Language Recognition," Y. C. Bilge, R. G. Cinbis, N. Ikizler-Cinbis, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2023. |
| "Matching terms of quality models and meta-models: toward a unified meta-model of OSS quality," N. Yılmaz, A. Kolukısa Tarhan, Software Quality Journal, 2023. |
| "Are papers published in predatory journals worthless? A geopolitical dimension revealed by content-based analysis of citations," Z. Taşkın, F. Krawczyk, E. Kulczycki, Quantitative Science Studies, 2023. |
| "GramBeddings: A New Neural Network for URL Based Identification of Phishing Web Pages Through N-gram Embeddings," A. S. Bozkir, F. C. Dalgic, M. Aydos, Computers & Security, 2023. |
| "Adaptive Inverse Compensation Fault-Tolerant Control for a Flexible Manipulator With Unknown Dead-Zone and Actuator Faults," Z. Zhao, Z. Tan, Z. Liu, M. Ö. Efe, C. K. Ahn, IEEE Transactions on Industrial Electronics, 2023. |
| "Switched step integral backstepping control for nonlinear motion systems with application to a laboratory helicopter," A. Haruna, Z. Mohamed, M. Ö. Efe, A. M. Abdullahi, ISA Transactions, 2023. |
| "Single parameter adaptive neural network control for multi-agent deployment with prescribed tracking performance," Z. Liu, Z. Lu, Z. Zhao, M. Ö. Efe, K.-S. Hong, Automatica, 156, 111207, 2023. |
| "Adaptive second order sliding mode guidance law for missile-target interception with fuzzy logic system," H. Gürsoy-Demir, M. Ö. Efe, Proceedings of the Institution of Mechanical Engineers, Part G: Journal of Aerospace Engineering, 2023. |
| "A comparative study of blind source separation methods," B. Baysal, M. Ö. Efe, Turkish Journal of Electrical Engineering and Computer Sciences, 2023. |
| "Online and Real-Time Trajectory Generation Method for Unforeseen Events Using a Modified Spline Approach," M. Altan Toksoz, M. Ö. Efe, V. Gazi, IEEE Robotics and Automation Letters, 2023. |
| "ASCARIS: Positional feature annotation and protein structure-based representation of single amino acid variations," F. Cankara, T. Doğan, Computational and Structural Biotechnology Journal, 21, pp. 4743–4758, 2023. |
| "How to approach machine learning-based prediction of drug/compound–target interactions," H. Atas Guvenilir, T. Doğan, Journal of Cheminformatics, 15 (1), 16, 2023. |
| "SELFormer: molecular representation learning via SELFIES language models," A. Yüksel, E. Ulusoy, A. Ünlü, T. Doğan, Machine Learning: Science and Technology, 4 (2), 025035, 2023. |
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| 2022 |
| "A two-level off-grid electric distribution problem on the continuous space," K. Gokbayrak, Computers & Operations Research, 144, 105853, 2022. |
| "A green dynamic TSP with detailed road gradient dependent fuel consumption estimation," H. Dündar, M. Soysal, M. Ömürgönülşen, A. Kanellopoulos, Computers & Industrial Engineering, 2022. |
| "Horizontal Collaboration among SMEs through a Supply and Distribution Cooperative," M. Soysal, S. Belbağ, S. Erişkan, Open Transportation Journal, 2022. |
| "Invigilators assignment in practical examination timetabling problems," M. Çimen, S. Belbağ, M. Soysal, Ç. Sel, International Journal of Industrial Engineering: Theory Applications and Practice, 2022. |
| "Quality evaluation models or frameworks for open source software: A systematic literature review," N. Yılmaz, A. Kolukısa Tarhan, Journal of Software: Evolution and Process, 2022. |
| "Factors affecting time to publication in information science," Z. Taşkın, A. Taşkın, G. Doğan, E. Kulczycki, Scientometrics, 2022. |
| "Uses of the Journal Impact Factor in national journal rankings in China and Europe," E. Kulczycki, Y. Huang, A. A. Zuccala, T. C. E. Engels, A. Ferrara, R. Guns, J. Pölönen, G. Sivertsen, Z. Taşkın, L. Zhang, Journal of the Association for Information Science and Technology, 2022. |
| "Revisiting “Family Matters”: How Citation Patterns in the Journal of Second Language Writing Reveal the Changing Nature of the Second Language Writing Field and the Decreasing Role of Composition Studies in It," A. M. Swatek, Z. Taşkın, N. C. Jackson, Journal of Writing Analytics, 2022. |
| "ERP failure: A systematic mapping of the literature," E. Coşkun, B. Gezici, M. Aydos, A. Kolukısa Tarhan, V. Garousi, Data & Knowledge Engineering, 2022. |
| "Security testing of web applications: A systematic mapping of the literature," M. Aydos, Ç. Aldan, E. Coşkun, A. Soydan, Journal of King Saud University - Computer and Information Sciences, 2022. |
| "The rise of ransomware: Forensic analysis for windows based ransomware attacks," I. Kara, M. Aydos, Expert Systems with Applications, 2022. |
| "On the existence of Equivalent-Input-Disturbance and multiple integral augmentation via H-Infinity Synthesis for unmatched systems," B. Kürkçü, C. Kasnakoğlu, M. Ö. Efe, R. Su, ISA Transactions, 2022. |
| "Plaintext recovery and tag guessing attacks on authenticated encryption algorithm COLM," S. E. Ulusoy, O. Kara, M. Ö. Efe, Journal of Information Security and Applications, 2022. |
| "A non-fragile robust observer design for uncertain time-delay fractional Itô stochastic systems with input nonlinearity: An SMC approach," K. Khandani, M. Parvizian, M. Ö. Efe, Proceedings of the Institution of Mechanical Engineers, Part I: Journal of Systems and Control Engineering, 2022. |
| "Adaptive Fault-Tolerant Control of a Probe-and-Drogue Refueling Hose under Varying Length and Constrained Output," Z. Liu, J. Liang, Z. Zhao, M. Ö. Efe, K.-S. Hong, IEEE Transactions on Control Systems Technology, 2022. |
| "A frequency domain comparison of disturbance observer based control schemes," A. Bayrak, M. Ö. Efe, Proceedings of the Institution of Mechanical Engineers, Part I: Journal of Systems and Control Engineering, 2022. |
| "Disturbance observer-based control schemes for quadrotors–a tutorial," A. Bayrak, M. Ö. Efe, International Journal of General Systems, 2022. |
| "A nonlinear disturbance observer-based adaptive integral sliding mode control for missile guidance system," H. Gürsoy-Demir, M. Ö. Efe, International Journal of General Systems, 2022. |
| "A New Adaptive Disturbance/Uncertainty Estimator Based Control Scheme for LTI Systems," A. Bayrak, B. Kürkçü, M. Ö. Efe, IEEE Access, 2022. |
| "Learning functional properties of proteins with language models," S. Unsal, H. Atas, M. Albayrak, K. Turhan, A. C. Acar, T. Doğan, Nature Machine Intelligence, 4 (3), pp. 227–245, 2022. |
| "Cloudy/clear weather classification using deep learning techniques with cloud images," M. Kalkan, G. E. Bostancı, M. S. Güzel, B. Kalkan, Ş. Özsarı, Ö. Soysal, G. Köse, Computers and Electrical Engineering, 102, 108271, 2022. |
| "Machine learning-based prediction of drug approvals using molecular, physicochemical, clinical trial, and patent-related features," F. Ciray, T. Doğan, Expert Opinion on Drug Discovery, 17 (12), pp. 1425–1441, 2022. |
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| 2021 |
| "A Bender's algorithm of decomposition used for the parallel machine problem of robotic cell," M. R. K. Alaei, M. Soysal, A. Elmi, A. Banaitis, N. Banaitiene, R. Rostamzadeh, S. Javanmard, Mathematics, 2021. |
| "A closed vendor managed inventory system under a mixed fleet of electric and conventional vehicles," M. Soysal, S. Belbağ, Ç. Sel, Computers & Industrial Engineering, 2021. |
| "A review on sustainable urban vehicle routing," H. Dündar, M. Ömürgönülşen, M. Soysal, Journal of Cleaner Production, 2021. |
| "Modeling heterogeneous fleet vehicle allocation problem with emissions considerations," H. C. Kazanç, M. Soysal, M. Çimen, Open Transportation Journal, 2021. |
| "A heuristic approach for green vehicle routing," M. Soysal, M. Çimen, Ç. Sel, S. Belbağ, RAIRO - Operations Research, 2021. |
| "Research data management in Turkey: A survey to build an effective national data repository," G. Dogan, Z. Taskin, A. U. Aydinoglu, IFLA Journal, 2021. |
| "Catch them alive: A malware detection approach through memory forensics, manifold learning and computer vision," A. S. Bozkir, E. Tahillioglu, M. Aydos, I. Kara, Computers & Security, 2021. |
| "An enhanced bandwidth disturbance observer based control– S-filter approach," M. Ö. Efe, C. Kasnakoğlu, Turkish Journal of Electrical Engineering and Computer Sciences, 2021. |
| "Online time delay and disturbance compensation for linear non-minimum phase systems," Ö. Demirtaş, M. Ö. Efe, Acta Polytechnica Hungarica, 2021. |
| "Online path planning of mobile robot using grasshopper algorithm in a dynamic and unknown environment," Z. Elmi, M. Ö. Efe, Journal of Experimental and Theoretical Artificial Intelligence, 2021. |
| "A nonlinear disturbance observer scheme for discrete time control systems," M. Ö. Efe, C. Kasnakoğlu, Turkish Journal of Electrical Engineering and Computer Sciences, 2021. |
| "Protein domain-based prediction of drug/ compound-target interactions and experimental validation on LIM kinases," T. Doğan, E. A. Güzelcan, M. Baumann, A. Koyas, H. Atas, I. R. Baxendale, M. Martin, R. Cetin-Atalay, PLoS Computational Biology, 17 (11), e1009171, 2021. |
| "MDeePred: Novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery," A. S. Rifaioglu, R. C. Atalay, D. C. Kahraman, T. Doğan, M. Martin, V. Atalay, Bioinformatics, 37 (5), pp. 693–704, 2021. |
| "X-Ray microtomography imaging of red lentil puffed snacks: Processing conditions, microstructure and texture," R.-M. Guillermic, E. C. Aksoy, S. Aritan, C. Erkinbaev, J. Paliwal, F. Koksel, Food Research International, 140, 109996, 2021. |
| "CROssBAR: Comprehensive resource of biomedical relations with knowledge graph representations," T. Doğan, H. Atas, V. Joshi, A. Atakan, A. S. Rifaioglu, E. Nalbat, A. Nightingale, R. Saidi, V. Volynkin, H. Zellner, R. Cetin-Atalay, M. Martin, V. Atalay, Nucleic Acids Research, 49 (16), e96, 2021. |
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| 2020 |
| "A voltage drop limited decentralized electric power distribution network," K. Gokbayrak, H. Avci, Computers & Operations Research, 122, 104907, 2020. |
| "Pickup and delivery with electric vehicles under stochastic battery depletion," M. Soysal, M. Çimen, S. Belbağ, Computers & Industrial Engineering, 2020. |
| "LogoSENSE: A companion HOG based logo detection scheme for phishing web page and E-mail brand recognition," A. S. Bozkir, M. Aydos, Computers & Security, 2020. |
| "H2H∞-Neural-Based FOPID Controller Applied for Radar-Guided Missile," M. Yaghi, M. Ö. Efe, IEEE Transactions on Industrial Electronics, 2020. |
| "Improved integral backstepping control of variable speed motion systems with application to a laboratory helicopter," A. Haruna, Z. Mohamed, M. Ö. Efe, M. A. M. Basri, ISA Transactions, 2020. |
| "Efficient swing control of an overhead crane with simultaneous payload hoisting and external disturbances," L. Ramli, Z. Mohamed, M. Ö. Efe, I. M. Lazim, H. I. Jaafar, Mechanical Systems and Signal Processing, 2020. |
| "DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations," A. S. Rifaioglu, E. Nalbat, V. Atalay, M. J. Martin, R. Cetin-Atalay, T. Doğan, Chemical Science, 11 (9), pp. 2531–2557, 2020. |
| "iBioProVis: interactive visualization and analysis of compound bioactivity space," A. Donmez, A. S. Rifaioglu, A. Acar, T. Doğan, R. Cetin-Atalay, V. Atalay, Bioinformatics, 36 (14), pp. 4227–4230, 2020. |
| "Evaluating cross-lingual textual similarity on dictionary alignment problem," Y. Sever, G. Ercan, Language Resources and Evaluation, 54 (4), pp. 1059–1078, 2020. |
| "Selective personalization and group profiles for improved web search personalization," S. Karimi Mansoub, G. Ercan, I. Çiçekli, Turkish Journal of Electrical Engineering and Computer Sciences, 28 (3), pp. 1631–1643, 2020. |
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| 2019 |
| "Synset expansion on translation graph for automatic wordnet construction," G. Ercan, F. Haziyev, Information Processing and Management, 56 (1), pp. 130–150, 2019. |
| "Assessing risks and threats with layered approach to Internet of Things security," M. Aydos, Y. Vural, A. Tekerek, Measurement and Control, 52 (5–6), pp. 338–353, 2019. |
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| 2016 |
| "Topic segmentation using word-level semantic relatedness functions," G. Ercan, I. Cicekli, Journal of Information Science, 42 (5), pp. 597–608, 2016. |
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